Downloads

Precomputed PSORTdb v3.00

Downloads

Individual Genomes

PSORTb predictions for complete NCBI genomes can be accessed via the PSORTdb Precomputed Genomes pages. Predictions are available for the following PSORTb versions:

• PSORTb version 3.00

Complete Database

Complete database downloads for PSORTdb version 4.00 are available:

Gram-positive bacteria	.tar.gz archive (383.10 Mb) .zip archive (383.10 Mb)
Gram-negative bacteria	.tar.gz archive (1228.07 Mb) .zip archive (1228.07 Mb)
Gram-positive with outer membrane bacteria	.tar.gz archive (73.47 Mb) .zip archive (73.47 Mb)
Gram-negative without outer membrane bacteria	.tar.gz archive (6.55 Mb) .zip archive (6.55 Mb)
Archaea	.tar.gz archive (42.94 Mb) .zip archive (42.94 Mb)

Version 1.00	.tsv file (0.93 Mb)	First version of ePSORTdb. Rey, S., M. Acab, J.L. Gardy, M.R. Laird, K. deFays, C. Lambert, and F.S.L. Brinkman (2005). PSORTdb: A Database of Subcellular Localizations for Bacteria. Nucleic Acids Research. 33:D164-168 (Database issue).
Version 2.00/3.00	.tsv file (1.60 Mb)	This version is v3.00, which improved upon v2.00 with new annotations and updated curation for v2.00 proteins, namely Thermotogae and special cell structure proteins. Peabody MA, Laird MR, Vlasschaert C, Lo R, Brinkman FS. (2016) PSORTdb: expanding the bacteria and archaea protein subcellular localization database to better reflect diversity in cell envelope structures. Nucleic Acids Research. 44(D1):D663-8. Yu, N.Y., Laird, M.R., Spencer, C, and Brinkman, F.S.L. (2011) PSORTdb--an expanded, auto-updated, user-friendly protein subcellular localization database for Bacteria and Archaea. Nucleic Acids Research. 39:D241-244 (Database issue).
Version 4.00	.tsv file (2.27 Mb)	Latest version, which includes new proteins of genome Campylobacter jejuni and proteins of genome Pseudomonas aeruginosa PAO1.

Note: Each ePSORTdb version is an update of the previous version, and may not contain the same data seen in older versions. Over time, proteins can become obsolete and are removed from NCBI, or new Genbank identifiers are assigned to existing proteins. As such, the data in ePSORTdb may be updated to reflect NCBI changes.

BLASTdb/FASTA

FASTA files containing sequences for all computationally- and experimentally-derived proteins in PSORTdb that can be used as a BLAST database.

cPSORTdb FASTA/BLASTdb Note: Large file size!	.tar.gz archive (4864.72 Mb) .zip archive (4864.71 Mb)
ePSORTdb FASTA/BLASTdb	.tar.gz archive (3.13 Mb) .zip archive (3.13 Mb)