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Precomputed Genomes - PSORTb v.2.0

Precomputed genomes now available in a new format! PSORTdb is a database containing both proteins of experimentally verified localization as well as predictions of localization for sequenced bacterial genomes. PSORTdb contains predictions and associated information for all of the genomes below generated with both PSORTb v.1.1.2 and 2.0. The data can be searched, browsed, BLASTed against and downloaded in a variety of combinations, making queries such as "show all Gram-negative cytoplasmic proteins" or "show all P. aeruginosa proteins with a predicted signal peptide" possible. Click here to visit PSORTdb.

The following bacterial chromsome RefSeqs from NCBI's Genome database have been analyzed using PSORTb version 2.0. Two files are available for each genome - the inputted FASTA file (accession.faa) and the outputted PSORTb results in tab-delimited text format (accession.out). The tab delimited text file can easily be imported into your favourite spreadsheet or database program. The old precomputed genomes page, using PSORT-B v.1.1.2, is available here.

If you have a favourite genome you'd like to see analyzed, contact us!

Gram-negative bacterial chromosomes:    
Organism (listed by phylum/class) Input PSORT-B Output
Alphaproteobacteria    
Agrobacterium tumefaciens C58 (U. Washington) circular chromosome NC_003304.faa NC_003304.out
Agrobacterium tumefaciens C58 (U. Washington) linear chromosome NC_003305.faa NC_003305.out
Agrobacterium tumefaciens C58 (Cereon) circular chromosome NC_003062.faa NC_003062.out
Agrobacterium tumefaciens C58 (Cereon) linear chromosome NC_003063.faa NC_003063.out
Bartonella henselae Houston-1 NC_005956.faa NC_005956.out
Bartonella quintana Toulouse NC_005955.faa NC_005955.out
Bradyrhizobium japonicum USDA 110 NC_004463.faa NC_004463.out
Brucella melitensis 16M chromosome 1 NC_003317.faa NC_003317.out
Brucella melitensis 16M chromosome 2 NC_003318.faa NC_003318.out
Brucella suis 1330 chromosome 1 NC_004310.faa NC_004310.out
Brucella suis 1330 chromosome 2 NC_004311.faa NC_004311.out
Caulobacter crescentus CB15 NC_002696.faa NC_002696.out
Mesorhizobium loti MAFF 303099 NC_002678.faa NC_002678.out
Rhodopseudomonas palustris CGA009 NC_005296.faa NC_005296.out
Rickettsia conorii Malish 7 NC_003103.faa NC_003103.out
Rickettsia prowazekii Madrid E NC_000963.faa NC_000963.out
Rickettsia typhi Wilmington NC_006142.faa NC_006142.out
Sinorhizobium meliloti 1021 NC_003047.faa NC_003047.out
Wolbachia endosymbiont of Drosophila melanogaster NC_002978.faa NC_002978.out
Betaproteobacteria    
Bordetella bronchiseptica RB50 NC_002927.faa NC_002927.out
Bordetella parapertussis 12822 NC_002928.faa NC_002928.out
Bordetella pertussis Tohama 1 NC_002929.faa NC_002929.out
Burkholderia mallei ATCC 23344 chromosome 1 NC_006348.faa NC_006348.out
Burkholderia mallei ATCC 23344 chromosome 2 NC_006349.faa NC_006349.out
Burkholderia pseudomallei K96243 chromosome 1 NC_006350.faa NC_006350.out
Burkholderia pseudomallei K96243 chromosome 2 NC_006351.faa NC_006351.out
Chromobacterium violaceum ATCC 12472 NC_005085.faa NC_005085.out
Neisseria meningitidis MC58 NC_003112.faa NC_003112.out
Neisseria meningitidis Z2491 NC_003116.faa NC_003116.out
Nitrosomonas europaea ATCC 19718 NC_004757.faa NC_004757.out
Ralstonia solanacearum GMI 1000 NC_003295.faa NC_003295.out
Delta/Epsilonproteobacteria    
Bdellovibrio bacteriovorus HD100 NC_005363.faa NC_005363.out
Campylobacter jejuni subsp. jejuni NCTC 11168 NC_002163.faa NC_002163.out
Desulfotalea psychrophilia LSv54 NC_006138.faa NC_006138.out
Desulfovibrio vulgaris subsp. vulgaris Hildenborough NC_002937.faa NC_002937.out
Geobacter sulfurreducens PCA NC_002939.faa NC_002939.out
Helicobacter hepaticus ATCC 51499 NC_004917.faa NC_004917.out
Helicobacter pylori 26695 NC_000915.faa NC_000915.out
Helicobacter pylori J99 NC_000921.faa NC_000921.out
Wolinella succinogenes DSM 1740 NC_005090.faa NC_005090.out
Gammaproteobacteria    
Acinetobacter sp. ADP1 NC_005966.faa NC_005966.out
Buchnera aphidicola Bp (Baizongia pistaciae) NC_004545.faa NC_004545.out
Buchnera aphidicola Sg (Schizaphis graminum) NC_004061.faa NC_004061.out
Buchnera aphidicola APS (Acrythosiphon pisum) NC_002528.faa NC_002528.out
Candidatus Blochmannia floridanus NC_005061.faa NC_005061.out
Coxiella burnetii RSA 493 NC_002971.faa NC_002971.out
Erwinia carotovora subsp. atroseptica SCRI1043 NC_004547.faa NC_004547.out
Escherichia coli CFT073 NC_004431.faa NC_004431.out
Escherichia coli K12 NC_000913.faa NC_000913.out
Escherichia coli O157:H7 NC_002695.faa NC_002695.out
Escherichia coli O157:H7 EDL933 NC_002655.faa NC_002655.out
Haemophilus ducreyi 35000HP NC_002940.faa NC_002940.out
Haemophilus influenzae Rd KW20 NC_000907.faa NC_000907.out
Legionella pneumophila subsp. pneumophila Philadelphia 1 NC_002942.faa NC_002942.out
Mannheimia succiniciproducens MBEL55E NC_006300.faa NC_006300.out
Methylococcus capsulatus Bath NC_002977.faa NC_002977.out
Pasteurella multocida Pm70 NC_002663.faa NC_002663.out
Photorhabdus luminescens subsp. laumondii TT01 NC_005126.faa NC_005126.out
Pseudomonas aeruginosa PA01 NC_002516.faa NC_002516.out
Pseudomonas putida KT2440 NC_002947.faa NC_002947.out
Pseudomonas syringae pv. yomato DC3000 NC_004578.faa NC_004578.out
Salmonella enterica subsp. enterica serovar Typhi CT18 NC_003198.faa NC_003198.out
Salmonella enterica subsp. enterica serovar Typhi Ty2 NC_004631.faa NC_004631.out
Salmonella typhimurium LT2 NC_003197.faa NC_003197.out
Shewanella oneidensis MR-1 NC_004347.faa NC_004347.out
Shigella flexneri 2a 301 NC_004337.faa NC_004337.out
Shigella flexneri 2a 2457T NC_004741.faa NC_004741.out
Vibrio cholerae 01 biovar eltor N16961 chromosome 1 NC_002505.faa NC_002505.out
Vibrio cholerae 01 biovar eltor N16961 chromosome 2 NC_002506.faa NC_002506.out
Vibrio parahaemolyticus RIMD 2210633 chromosome 1 NC_004603.faa NC_004603.out
Vibrio parahaemolyticus RIMD 2210633 chromosome 2 NC_004605.faa NC_004605.out
Vibrio vulnificus CMCP6 chromosome 1 NC_004459.faa NC_004459.out
Vibrio vulnificus CMCP6 chromosome 2 NC_004460.faa NC_004460.out
Vibrio vulnificus YJ016 chromosome 1 NC_005139.faa NC_005139.out
Vibrio vulnificus YJ016 chromosome 2 NC_005140.faa NC_005140.out
Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis NC_004344.faa NC_004344.out
Xanthomonas axonopodis pv. citri 306 NC_003919.faa NC_003919.out
Xanthomonas campestris pv. campestris ATCC 33913 NC_003902.faa NC_003902.out
Xylella fastidiosa 9a5c NC_002488.faa NC_002488.out
Xylella fastidiosa Temecula1 NC_004556.faa NC_004556.out
Yersinia pestis biovar Mediaevails 91001 NC_005810.faa NC_005810.out
Yersinia pestis CO92 NC_003143.faa NC_003143.out
Yersinia pestis KIM NC_004088.faa NC_004088.out
Yersinia pseudotuberculosis IP 32953 NC_006155.faa NC_006155.out
Bacteroidetes/Chlorobi    
Bacteroides fragilis NC_006347.faa NC_006347.out
Bacteroides thetaiotaomicron VPI-5482 NC_004663.faa NC_004663.out
Chlorobium tepidum TLS NC_002932.faa NC_002932.out
Porphyromonas gingivalis W83 NC_002950.faa NC_002950.out
Chlamydiales    
Chlamydia muridarum NC_002620.faa NC_002620.out
Chlamydia trachomatis D/UW-3/CX NC_000117.faa NC_000117.out
Chlamydophila caviae GPIC NC_003361.faa NC_003361.out
Chlamydophila pneumoniae AR39 NC_002179.faa NC_002179.out
Chlamydophila pneumoniae CWL029 NC_000922.faa NC_000922.out
Chlamydophila pneumoniae J138 NC_002491.faa NC_002491.out
Chlamydophila pneumoniae TW-183 NC_005043.faa NC_005043.out
Parachlamydia sp. UWE25 NC_005861.faa NC_005861.out
Cyanobacteria    
Gloeobacter violaceus PCC 7421 NC_005125.faa NC_005125.out
Nostoc sp. PCC 7120 NC_003272.faa NC_003272.out
Prochlorococcus marinus subsp. marinus CCMP1375 NC_005042.faa NC_005042.out
Prochlorococcus marinus subsp. pastoris CCMP1986 NC_005072.faa NC_005072.out
Prochlorococcus marinus MIT9313 NC_005071.faa NC_005071.out
Synechococcus sp. WH8102 NC_005070.faa NC_005070.out
Synechocystis sp. PCC 6803 NC_000911.faa NC_000911.out
Thermosynechococcus elongatus BP-1 NC_004113.faa NC_004113.out
Firmicutes (class Mollicutes)    
Mesoplasma florum L1 NC_006055.faa NC_006055.out
Mycoplasma gallisepticum R NC_004829.faa NC_004829.out
Mycoplasma genitalium G-37 NC_000908.faa NC_000908.out
Mycoplasma mobile 163K NC_006908.faa NC_006908.out
Mycoplasma mycoides subsp. mycoides Sc PG1 NC_005364.faa NC_005364.out
Mycoplasma penetrans HF-2 NC_004432.faa NC_004432.out
Mycoplasma pneumoniae M129 NC_000912.faa NC_000912.out
Mycoplasma pulmonis UAB CTIP NC_002771.faa NC_002771.out
Ureaplasma parvum serovar 3 ATCC 700970 NC_002162.faa NC_002162.out
Onion yellows phytoplasma OY-M NC_005303.faa NC_005303.out
Spirochaetales    
Borrelia burgdorferi B31 NC_001318.faa NC_001318.out
Borrelia garinii PB1 NC_006156.faa NC_006156.out
Leptospira interrogans serovar Copenhageni str. Fiocruz LI-130 chromosome 1 NC_005823.faa NC_005823.out
Leptospira interrogans serovar Copenhageni str. Fiocruz LI-130 chromosome 2 NC_005824.faa NC_005824.out
Leptospira interrogans serovar lai 56601 chromosome 1 NC_004342.faa NC_004342.out
Leptospira interrogans serovar lai 56601 chromosome 2 NC_004343.faa NC_004343.out
Treponema denticola ATCC 35405 NC_002967.faa NC_002967.out
Treponema pallidum subsp. pallidum Nichols NC_000919.faa NC_000919.out
Other phyla    
Aquifex aeolicus VF5 NC_000918.faa NC_000918.out
Fusobacterium nucleatum subsp. nucleatum ATCC 25586 NC_003454.faa NC_003454.out
Pirellula sp. 1 NC_005027.faa NC_005027.out
Thermotoga maritima MSB8 NC_000853.faa NC_000853.out
     
Gram-positive bacterial chromosomes:    
Organism (listed by phylum/class) Input PSORT-B Output
Actinobacteridae    
Bifidobacterium longum NCC2705 NC_004307.faa NC_004307.out
Corynebacterium diphtheriae NCTC 13129 NC_002935.faa NC_002935.out
Corynebacterium efficiens YS-314 NC_004369.faa NC_004369.out
Corynebacterium glutamicum ATCC 13032 NC_003450.faa NC_003450.out
Leifsonia xyli subsp. xyli CTCB07 NC_006087.faa NC_006087.out
Mycobacterium avium subsp. paratuberculosis k10 NC_002944.faa NC_002944.out
Mycobacterium bovis subsp. bovis AF2122/97 NC_002945.faa NC_002945.out
Mycobacterium leprae TN NC_002677.faa NC_002677.out
Mycobacterium tuberculosis CDC1551 NC_002755.faa NC_002755.out
Mycobacterium tuberculosis H37Rv NC_000962.faa NC_000962.out
Propionibacterium acnes KPA171202 NC_006085.faa NC_006085.out
Streptomyces avermitilis MA-4680 NC_003155.faa NC_003155.out
Streptomyces coelicolor A3(2) NC_003888.faa NC_003888.out
Symbiobacterium thermophilum IAM 14863 NC_006177.faa NC_006177.out
Tropheryma whipplei TW08/27 NC_004551.faa NC_004551.out
Tropheryma whipplei Twist NC_004572.faa NC_004572.out
Deinococci    
Deinococcus radiodurans R1 chromosome 1 NC_001263.faa NC_001263.out
Deinococcus radiodurans R1 chromosome 2 NC_001264.faa NC_001264.out
Thermus thermophilus HB27 NC_005835.faa NC_005835.out
Firmicutes (class Bacilli)    
Bacillus anthracis A2012 NC_003995.faa NC_003995.out
Bacillus anthracis . Ames NC_003997.faa NC_003997.out
Bacillus anthracis Ames 0581 NC_007530.faa NC_007530.out
Bacillus anthracis Sterne NC_005945.faa NC_005945.out
Bacillus cereus ATCC 10987 NC_003909.faa NC_003909.out
Bacillus cereus ATCC14579 NC_004722.faa NC_004722.out
Bacillus cereus ZK NC_006274.faa NC_006274.out
Bacillus halodurans C-125 NC_002570.faa NC_002570.out
Bacillus licheniformis ATCC 14580 NC_006270.faa NC_006270.out
Bacillus licheniformis DSM 13 NC_006322.faa NC_006322.out
Bacillus subtilis subsp. subtilis 168 NC_000964.faa NC_000964.out
Bacillus thuringiensis serovar konkukian 97-27 NC_005957.faa NC_005957.out
Enterococcus faecalis V583 NC_004668.faa NC_004668.out
Lactobacillus johnsonii NCC 533 NC_005362.faa NC_005362.out
Lactobacillus plantarum WCFS1 NC_004567.faa NC_004567.out
Lactococcus lactis Il1403 NC_002662.faa NC_002662.out
Listeria innocua Clip 11262 chromosome NC_003212.faa NC_003212.out
Listeria monocytogenes EGD-e NC_003210.faa NC_003210.out
Listeria monocytogenes 4b F2365 NC_002973.faa NC_002973.out
Oceanobacillus iheyensis HTE831 NC_004193.faa NC_004193.out
Staphylococcus aureus subsp. aureus MRSA252 NC_002952.faa NC_002952.out
Staphylococcus aureus subsp. aureus MSSA476 NC_002953.faa NC_002953.out
Staphylococcus aureus subsp. aureus Mu50 NC_002758.faa NC_002758.out
Staphylococcus aureus subsp. aureus MW2 NC_003923.faa NC_003923.out
Staphylococcus aureus subsp. aureus N315 NC_002745.faa NC_002745.out
Staphylococcus epidermidis ATCC 12228 NC_004461.faa NC_004461.out
Streptococcus agalactiae 2603V/R NC_004116.faa NC_004116.out
Streptococcus agalactiae NEM316 NC_004368.faa NC_004368.out
Streptococcus mutans UA159 NC_004350.faa NC_004350.out
Streptococcus pneumonia R6 NC_003098.faa NC_003098.out
Streptococcus pneumonia TIGR4 NC_003028.faa NC_003028.out
Streptococcus pyogenes M1 GAS NC_002737.faa NC_002737.out
Streptococcus pyogenes MGAS315 NC_004070.faa NC_004070.out
Streptococcus pyogenes MGAS10394 NC_006086.faa NC_006086.out
Streptococcus pyogenes MGAS8232 NC_003485.faa NC_003485.out
Streptococcus pyogenes SSI-1 NC_004606.faa NC_004606.out
Firmicutes (class Clostridia)    
Clostridium acetobutylicum ATCC824 NC_003030.faa NC_003030.out
Clostridium perfringens 13 NC_003366.faa NC_003366.out
Clostridium tetani E88 NC_004557.faa NC_004557.out
Thermoanaerobacter tengcongensis NC_003869.faa NC_003869.out
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